Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015835039.1_cds_XP_016505806.1_19102
CDS Infomation

[gene=LOC107823631] [db_xref=GeneID:107823631] [protein=pectate lyase-like] [protein_id=XP_016505806.1] [location=join(11813..12048,12432..13080,13163..13405,13529..13759)] [gbkey=CDS]
Sequence

ATGCTATATAGCTACATTAAAAAGGATAAAAAAGCTATGGCCTCTATTAGTGGGAATTCA
GTTTTGTTAATATTGCTTATATCGTTAGCTTCATTAGTCCCTAATTTGCATGCCCGAATT
GCTGAATTTGATGCATATTTGGAAAACAAAGCTAAGGAAGCGCTCAATTCTTCTCTTGCT
GCATACAATGAACATCCTGAGCAAGTCACTAATACATTCAATAGAGAAGTTGGAGACACA
TTGCTAAATATTACAAGCTTAAGGAGGCATCTTAAAGAAAAAAGTAGTTGCATGGCAACC
AATCCAATCGACAGATGCTGGAGGTGTGACGAAAACTGGGCGAAAAACAGGAAAAAACTA
GCAGATTGCGCTCGGGGATTTGGCCACAAAACAACAGGTGGTAAAGCAGGAAGGTACTAT
GTTGTAACTGATGACTCGGATGATGACGTGAAGGATCCAAAGCCGGGGACCCTTCGTCAC
GCTGTGATCCAAGAGGAGCCATTGTGGATTATCTTTGAGAAATCAATGATAATTAGGTTG
AAGCAAGAACTGATGATTACGAGTGACAAGACGATCGATGGCAGGGGAGTTTCCCTTCAC
ATTGCCTATGGTGCTGGTTTCACTATCCAATTTGTGCATAATGTTATAATCCACAACATT
AGGATTCATCATATCATATCTACCTCAGGTGGAATGATAAGGGATTCTGGTAAGCATATT
GGAATTAGGACAGTGAGTGATGGTGATGGTATTTCTATTTTTGGTTCAAACCATATTTGG
ATTGACCATTGCACTTTGTCCCAATGTACTGATGGCCTCATTGATGCCATCATGGCTTCC
ACTGCAATCACCATTTCTAACTGCAAATTCAATCATCACAACGACGTGATGCTTTTGGGG
GCAACTGATGCCTTCCCTCAAGATTCAATAATGCAAGTCACTGTTGCATTCAATCGGTTC
GGAAAGGGATTGATTCAAAGGATGCCAAGGTGCAGGTGGGGATTCTTCCATGTTGTCAAC
AATGACTACTCTCATTGGCAAATGTATGCAATTGGTGGCAGCGCTAATCCAACCATTATC
AGCCAGGGTAACCGTTTCAAGGCCGCTAACAACCCTAACACTAAGCAGGTGACTAAGAGG
GATTACGCGCCAGAATCGGTGTGGAAGAACTGGCAATGGGTATCAGAGGGTGATTTGTTT
TTAAATGGAGCTTATTTCGTGGAGTCAGGGCCACAAAACAAGAAAAAATCTGCATTGACT
AAACCTCATAGGATCAAGTTCAAGCCTGGTTCATATGCAGGCCGACTCACTCGCTATGCT
GGTGTACTGATCAAATGCAAAGCCGGCACACCTTGTTAA

Peptide Sequence

PEP ID

XP_016505806.1
PEP Infomation

PREDICTED: pectate lyase-like [Nicotiana tabacum]
Sequence

MLYSYIKKDKKAMASISGNSVLLILLISLASLVPNLHARIAEFDAYLENKAKEALNSSLA
AYNEHPEQVTNTFNREVGDTLLNITSLRRHLKEKSSCMATNPIDRCWRCDENWAKNRKKL
ADCARGFGHKTTGGKAGRYYVVTDDSDDDVKDPKPGTLRHAVIQEEPLWIIFEKSMIIRL
KQELMITSDKTIDGRGVSLHIAYGAGFTIQFVHNVIIHNIRIHHIISTSGGMIRDSGKHI
GIRTVSDGDGISIFGSNHIWIDHCTLSQCTDGLIDAIMASTAITISNCKFNHHNDVMLLG
ATDAFPQDSIMQVTVAFNRFGKGLIQRMPRCRWGFFHVVNNDYSHWQMYAIGGSANPTII
SQGNRFKAANNPNTKQVTKRDYAPESVWKNWQWVSEGDLFLNGAYFVESGPQNKKKSALT
KPHRIKFKPGSYAGRLTRYAGVLIKCKAGTPC

Transcript Sequence

Gene sequence data has not been registered.